FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435905
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60521.3883759075945448No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11230.2576249412142554No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10400.23858409515834872No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9240.21197279223684062No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7630.17503813904405777No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7200.16517360434039527No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7130.16356774985375253No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4930.11309803741640953No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4670.10713343503745082No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4430.10162764822610432No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)