FastQCFastQC Report
Wed 31 May 2023
EGAF00007941232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447877
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18510.4132831112113371No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12240.2732893182726508No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9920.2214893821294686No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT9100.2031807840098956No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8120.1812997765011376No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7720.17236875302817514No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT6930.15472998166907434No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6380.14244982439375098No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5930.1324024229866682No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5230.11677313190898393No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5190.11588002956168769No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5120.11431710045391927No Hit
GGACGCAGAACGACCGGTCACGACGCTAGAGCGGTGTTTAGCGC5060.1129774469329749No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC5010.1118610689988546No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4930.1100748643042621No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4530.10114384083129967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)