FastQCFastQC Report
Wed 31 May 2023
EGAF00007941233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447877
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60871.3590784969980598No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18820.4202046544028829No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13150.29360739667364033No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10870.24270056287775438No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10410.23242988588384758No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10240.22863420090783854No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC9430.21054887837508957No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7840.17504806007006388No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7290.16276790279474052No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC6890.15383687932177809No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6860.1531670525613059No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5460.12190847040593733No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5400.12056881688499298No Hit
CTGGGTGAGGCAGAATCCTTCACCATGGCCA5070.11320072251979896No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG5040.11253089575932677No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5020.11208434458567866No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4960.1107446910647343No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4900.10940503754378991No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4530.10114384083129967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)