FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426343
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56911.3348407268326206No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21400.5019432710282566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21140.4958448948381936No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14720.3452619135297167No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14020.32884320840262415No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10630.249329765001419No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8960.21015942562678408No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8930.20945576683562298No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8340.19561714394278787No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8310.19491348515162674No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7650.17943299174608238No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7420.17403827434718055No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6270.14706468735267145No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6090.1428427346057048No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5790.13580614669409372No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5640.1322878527382882No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5400.12665858240899933No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5300.12431305310512895No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4690.1100053243515198No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4440.10414150109184389No Hit

[OK]Adapter Content

Adapter graph