FastQCFastQC Report
Sun 21 May 2023
EGAF00007941237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430040
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59741.3891731001767278No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23050.5359966514742814No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20530.4773974513998698No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14630.34020091154311227No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14610.3397358385266487No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10460.24323318761045484No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9470.2202120732955074No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8880.20649241930983164No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8770.20393451771928192No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8570.19928378755464607No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7550.17556506371500324No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7360.17114687005859922No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6560.1525439494000558No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6500.15114873035066506No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5700.13254580969212165No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5590.12998790810157193No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5570.12952283508510837No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5250.122081666821691No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4600.1069667937866245No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4550.10580411124546554No Hit

[OK]Adapter Content

Adapter graph