FastQCFastQC Report
Wed 31 May 2023
EGAF00007941239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443716
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61551.3871485364512435No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20810.46899368064257324No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19830.44690748136195224No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13980.3150663938194701No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13880.31281270001532513No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13030.2936563026800927No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12900.2907265007347042No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8940.20148022609056243No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8690.19584599158019994No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8450.19043712645025196No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8000.1802955043315995No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6920.15595561124683355No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6400.14423640346527958No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6280.14153197090030561No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5820.1311649794012386No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5800.13071424064040962No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5690.12823517745585014No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5570.12553074489087615No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5450.12282631232590216No Hit
GACGCTACCAACGCTACGACTACGTCCAGCT4890.1102056270226902No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4760.1072758250773017No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4740.1068250863164727No Hit

[OK]Adapter Content

Adapter graph