FastQCFastQC Report
Wed 31 May 2023
EGAF00007941241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468497
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29980.6399187187964918No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25770.5500568840355434No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21370.4561395270407281No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15610.33319316879296984No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14040.29968174822891075No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13740.2932782920701733No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13640.29114380668392753No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12980.27705620313470525No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12310.26275515104685837No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11640.24845409895901147No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10990.23457994394841375No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9470.20213576607747757No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9000.19210368476212228No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8910.19018264791450104No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8300.17716228705840165No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7020.14984087411445537No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6640.14172982964672132No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6370.13596671910385766No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6330.13511292494935934No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6190.1321246454086152No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5920.12636153486575155No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5780.12337325532500742No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5430.11590255647314712No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5190.11077979154615718No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5110.10907220323716053No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4730.10096115876942649No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4690.10010736461492815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)