FastQCFastQC Report
Sun 21 May 2023
EGAF00007941243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432588
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57631.3322144858387195No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27400.6333971353805469No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19850.45886617289430126No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16030.37056044088139295No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12970.2998233885359742No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12590.29103904870222935No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12490.2887273803249281No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12360.2857222114344365No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11540.2667665307405661No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10120.23394083978288813No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9870.22816166883963493No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8590.19857231361017874No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7960.18400880283318075No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7900.18262180180680002No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7680.1775361313767372No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6820.15765578333194633No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6460.14933377717366178No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6180.14286110571721825No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6030.13939360315126634No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5650.1306092633175215No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5450.125985926562919No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5410.12506125921199848No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5050.11673925305371394No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC4540.10494974432947747No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4460.10310040962763646No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4440.10263807595217621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)