FastQCFastQC Report
Sun 21 May 2023
EGAF00007941247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422490
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59241.4021633648133685No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24870.588652985869488No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13610.3221378020781557No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11090.26249141991526426No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10940.258941040024616No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8810.20852564557741013No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8740.2068688016284409No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8020.18982697815332908No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7830.18532983029184125No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7550.1787024544959644No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7160.16947146678027883No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6910.16355416696253164No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6650.1574001751520746No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6590.15598002319581528No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6360.1505361073634879No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6250.14793249544367915No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6040.14296196359677152No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5680.13444105185921562No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5600.13254751591753652No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5560.13160074794669696No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5420.12828706004875853No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5000.11834599635494332No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4910.11621576842055434No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4770.11290208052261592No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4630.1095883926246775No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4390.10390778479964023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)