FastQCFastQC Report
Sun 21 May 2023
EGAF00007941249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456496
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28010.6135869755704322No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26960.5905856787354106No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15430.3380095334898882No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12490.27360590235182786No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11760.25761452455224143No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9400.20591637166590726No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9310.20394483193719115No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9040.19803021275104274No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8160.17875293540359607No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8080.17700045564473732No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7960.17437173600644915No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7500.1642949773930111No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7470.16363779748343907No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7110.15575163856857455No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7050.15443727874943045No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7040.1542182187795731No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6980.152903858960429No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6690.14655111983456592No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6260.13713154113069995No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6100.13362658161298238No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5920.1296835021555501No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5600.12267358312011496No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5580.12223546318040027No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5180.11347306438610634No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5110.11193964459710491No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5030.11018716483824612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)