FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493504
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT30770.6235005187394631No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC26440.5357606017377772No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22660.4591654778887304No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19420.3935125145895474No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19340.39189145376734535No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16720.3388017118402282No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15660.3173226559460511No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG14790.2996936195046038No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13850.28064615484372973No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13620.2759856049798988No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12910.26159869018285564No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12760.2585592011412268No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12640.2561276099079237No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG10940.22168006743613022No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10750.21783004798340033No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10490.2125616003112437No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10350.2097247438723901No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10020.20303786798080664No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC9840.19939048113085203No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC9340.18925885099208922No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9330.18905621838931397No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9280.18804305537543767No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9000.1823693424977305No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8700.17629036441447282No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8270.16757716249513682No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8140.16494293865905849No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7870.15947185838412656No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC7450.1509612890675658No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA7080.14346388276488134No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7070.14326125016210609No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC7020.1422480871482298No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6550.13272435481779277No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5740.11631111399299703No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5710.11570321618467126No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC5510.11165056412916613No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC5310.10759791207366101No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT5280.10699001426533523No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC5170.10476105563480742No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5000.10131630138762807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)