FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389664
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53351.3691282746160796No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19810.5083867126550053No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9790.25124209575429085No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7770.19940256220744024No Hit
CGTCGTGAACACGGTGGCCACGACGATGATC6550.168093536995976No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6360.16321754126632176No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6260.16065122772439847No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6190.15885480824505213No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5260.13498809230516548No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4850.12446620678327996No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4560.11702389751170239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)