FastQCFastQC Report
Wed 31 May 2023
EGAF00007941265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416770
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58931.41396933560477No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34510.828034647407443No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14650.3515128248194448No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13740.32967823979653044No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11500.2759315689708952No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG10650.2555366269165247No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9150.21954555270292966No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8660.20778846845982196No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8520.20442930153321978No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8170.19603138421671423No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA8070.19363197926914125No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6970.16723852484583823No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6870.16483911989826522No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6720.16124001247690573No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6600.15836072653981811No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6440.15452167862370134No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6090.14612376130719582No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5880.14108501091729253No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA5300.1271684622213691No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4820.1156513184730187No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4720.1132519135254457No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC4580.10989274659884349No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4540.10893298461981428No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG4530.10869304412505698No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA4520.10845310363029967No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4410.10581375818796937No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4390.10533387719845479No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)