FastQCFastQC Report
Wed 31 May 2023
EGAF00007941271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464087
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46911.0108018539627268No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32870.7082723713441661No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20250.43634059993061647No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18670.4022952592940548No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14160.30511520469222364No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12870.27731869240034734No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8410.18121602199587578No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8130.1751826704906623No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7490.16139215276446012No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7070.15234212550663992No Hit
GGTCGTGGCATCACCGGTGTTATGATCCCAG6880.14824806555667364No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6630.14286114456987592No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6360.13704326990413435No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6230.13424207099099952No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5850.12605395109106698No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5740.12368370585687598No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5720.12325275217793215No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5520.11894321538849398No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5180.11161700284644904No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5000.10773841973595469No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4960.10687651237806703No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4850.10450626714387604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)