FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412435
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22390.5428734224786935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8350.20245614460460437No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7280.1765126626013796No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6050.14668978142010256No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5900.14305284469067853No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5600.13577897123183047No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5020.12171614921139089No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4870.11807921248196687No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4810.11662443779019724No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)