FastQCFastQC Report
Sun 21 May 2023
EGAF00007941281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446823
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48591.0874552115714724No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14520.32496089055397775No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12540.2806480418420717No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10430.23342576366928292No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9300.20813610758622542No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7170.16046622488099313No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7010.1568853886214452No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5560.12443406001929175No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5380.12040561922730028No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4730.1058584719228867No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4680.10473946059177797No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4600.10294904246200398No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4480.100263415267343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)