FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475130
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50241.0573948182602657No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15480.32580556900216784No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15470.32559510028834215No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12820.26982089112453433No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11070.23298886620503864No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11010.23172605392208448No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9640.202891840127965No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7120.14985372424389115No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6970.1466966935365058No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6440.13554185170374422No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6410.13491044556226717No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6390.1344895081346158No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6180.13006966514427631No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5540.11659966745943215No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5250.11049607475848715No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5240.11028560604466146No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5020.10565529434049628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)