FastQCFastQC Report
Wed 31 May 2023
EGAF00007941289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492899
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24090.48874110111807895No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8710.17670963016764082No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8700.17650674884712692No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8340.16920302130862508No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8260.16757997074451358No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7490.15195810906494028No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7310.1483062452956894No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6450.13085845173149063No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6420.13024980776994882No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6250.12680082532121184No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6220.12619218135967003No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5950.1207143857057937No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5590.11341065816729187No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5110.1036723547826228No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5040.10225218553902524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)