FastQCFastQC Report
Wed 31 May 2023
EGAF00007941301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506454
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35930.7094425160034277No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24720.48809961023113646No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17810.35166076287283743No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17340.3423805518368894No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13520.2669541557574824No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12270.2422727434278335No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11240.22193525966820285No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10620.209693279152697No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7870.1553941720274694No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7760.15322220774246031No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7650.15105024345745122No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7440.1469037661860702No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA6750.13327962658010403No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6750.13327962658010403No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5230.10326702918725097No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA5080.1003052597076931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)