FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464296
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11850.2552251150128366No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11590.2496252390716267No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC9160.19728793700570327No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8590.18501128590382No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8270.17811913089925394No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8100.17445767355307823No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7820.16842703792408292No Hit
GGAAGCGTCGTTAACTGGGTTGGTCACGTCGACGTTTGCAGACG7330.15787342557334114No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7050.15184278994434586No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6190.1333201233695746No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5880.12664334820890122No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5830.12556644898943778No Hit
GGCAGCCGGACCAAATTCCGGGTTGAAAACACCGTGCGCTACAG5400.11630511570205214No Hit
CAGGTTGTAGCAGCCCCAACCACCTTGCAGCCAGTGACCCGGCA4850.10445922428795425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)