FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464296
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22700.4889122456364044No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18240.392852835260265No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15530.3344848975653463No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12270.2642710684563296No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC9930.2138721849854403No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9600.20676465013698156No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9190.19793407653738135No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8340.17962678980650276No Hit
TTCCTGCACGATGCGAAAGATCGTCTGCAGG7750.1669193790168341No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7190.1548581077588435No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6460.1391353791546772No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6230.13418164274514532No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6180.1331047435256819No Hit
ATGCTGCTGAAAATGAAGGCGCACATTGACC5490.11824353429708634No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5390.11608973585815945No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT5150.11092061960473491No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4850.10445922428795425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)