FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386679
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19460.503259809816411No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11080.28654258441756597No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9820.2539574168754962No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9310.24076818239418224No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8990.23249258428825978No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8880.2296478474393489No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7860.203269378476721No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6500.16809808652655045No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.15077105299227525No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5470.14146100512311247No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5440.14068516780068221No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4650.12025478497668608No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4520.11689282324615508No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4240.10965167490347291No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4200.10861722514023259No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4080.10551387585051167No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3910.10111746435674035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)