FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412499
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41040.9949115028157645No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30620.7423048298298905No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11060.2681218621136051No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10390.2518793984955115No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7880.19103076613519063No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7610.18448529572192904No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7030.17042465557492262No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6150.1490912705242922No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5990.14521247324235936No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5790.14036397663994338No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4670.11321239566641372No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4420.10715177491339373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)