FastQCFastQC Report
Wed 31 May 2023
EGAF00007941319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517938
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43180.8336905189424216No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11860.22898493642096157No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7010.13534438484915184No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6500.12549764643644606No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5770.11140329537512213No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5200.10039811714915685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)