FastQCFastQC Report
Sun 21 May 2023
EGAF00007941324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529399
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10030.189460123649648No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8710.16452618913144906No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7040.13298098409706102No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6260.11824729551812527No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6020.11371385287845275No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5480.10351360693918953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)