FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529399
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45590.8611652080944618No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11970.22610545165366763No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9740.183982213793377No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7580.14318123003632421No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6960.13146983655050348No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6860.1295809021173066No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6390.12070291028128122No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6350.11994733650800248No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6040.11409163976509211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)