FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486734
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43870.9013136538643284No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12840.26379911820419366No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11860.2436649175935932No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10680.21942169645021714No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10640.21859989234366203No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8340.17134615621674262No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6760.13888489400781537No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6710.13785763887462146No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6600.13559767758159486No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6550.13457042244840098No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6250.12840689164923758No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6010.12347606700990686No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5640.11587437902427199No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)