FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501315
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40950.8168516800813861No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24220.4831293697575376No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11550.23039406361269862No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11490.22919721133419108No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9790.19528639677647786No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9470.18890318462443773No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8850.17653571107985996No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6300.12566948924329016No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5840.11649362177473246No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5320.10612090202766723No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5130.1023308698123934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)