FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512069
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38700.7557575248648131No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14570.2845319673715847No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13560.264808062975888No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13490.26344105970093873No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7160.13982490640909723No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6330.12361615329184153No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5830.113851844185061No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5810.11346127182078977No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5620.10975083436021318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)