FastQCFastQC Report
Wed 31 May 2023
EGAF00007941332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528145
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20250.3834174327126073No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18520.35066127673271547No Hit
CAGTGGCACCTTACGATCAACCGGCAGACCTACTTCGGCCTGCA10170.192560755095665No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9980.18896325819613932No Hit
CAGCGGCACCTTACGGTCAACTGGCAGGCCAACTTCCGCCTGCA9110.17249050923515324No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT7400.14011303713942194No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6440.12193621069971315No Hit
CGGAACTTTACGGTCAACTGGCAGACCTACTTCTGCCTGCAGTG5990.11341582330609964No Hit
CTTACGATCAACCGGCAGGCCGACTTCCGCCTGCAGAGCCTCTT5610.10622082950704827No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5600.10603148756496797No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT5300.10035122930255895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)