FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499591
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19780.39592386572216076No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18140.36309701335692596No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9320.18655260002682195No Hit
CAGTGGCACCTTACGATCAACCGGCAGACCTACTTCGGCCTGCA9020.1805476880087912No Hit
CAGCGGCACCTTACGGTCAACTGGCAGGCCAACTTCCGCCTGCA8480.16973884637633585No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT6780.13571101160749494No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6140.12290053263569599No Hit
CTTACGATCAACCGGCAGGCCGACTTCCGCCTGCAGAGCCTCTT5410.10828858005848783No Hit
CGGAACTTTACGGTCAACTGGCAGACCTACTTCTGCCTGCAGTG5270.10548628778340682No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5130.1026839955083258No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5070.10148301310471965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)