FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499591
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41480.8302791683597183No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41150.8236737651398843No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9050.18114817921059426No Hit
ACCGGCATCGTGAACGGTATGGATGTTTCCG8780.1757437583943666No Hit
ACTGGTATCGTAAACGGCATGGATGTTTCCG8090.16193246075289586No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG6620.1325083918645452No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6570.1315075731948734No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6120.12250020516782728No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5930.11869709422307446No Hit
ATCACTGGCATTGTCAACGGTATGGATGTAT5490.10988988992996271No Hit
ACTGGTATCACCGGTATTGTTAACGGCATGG5380.10768808885668477No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5200.10408514164586631No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5160.10328448671012888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)