FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533059
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15650.2935885145921934No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG12070.22642896940113572No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8370.157018266270713No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7990.14988959946272362No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7460.13994698523052795No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5810.10899356356425836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)