FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533059
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17200.32266597130899205No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15380.28852340922862196No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15380.28852340922862196No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG12510.2346832151788076No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9290.17427714380584514No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8530.1600198101898664No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5730.10749279160468166No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA5610.10524163366531658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)