FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555187
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT26340.47443474000652036No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20820.37500878082519945No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19730.35537575627671397No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12650.2278511564571937No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12560.22623008103575915No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6650.1197794616948884No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6630.11941922271234737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)