FastQCFastQC Report
Sun 21 May 2023
EGAF00007941339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555187
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA53300.9600368884718121No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27170.48938465778197254No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA25430.458043866300904No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15530.27972556994310027No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6860.12356197101156907No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6800.12248125406394603No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6790.12230113457267551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)