FastQCFastQC Report
Sun 21 May 2023
EGAF00007941340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528757
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10970.20746770255523805No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG10610.2006592820520579No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9650.18250349404357766No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8650.1635912148680774No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7100.13427718214605197No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6780.1282252528098919No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6040.11423016622002169No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5710.10798911409210657No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5700.10779999130035157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)