FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528757
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46160.8729908067410928No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19640.37143716300682544No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14660.27725401271283406No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10620.20084840484381294No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA10590.20028103646854792No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9860.18647507267043273No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8730.16510419720211744No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5770.1091238508426366No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5760.10893472805088159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)