FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483984
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9190.18988231015901352No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7730.15971602367020396No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7570.1564101292604714No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7440.1537240900525637No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7170.14814539323614004No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6690.13822771000694237No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5200.10744156831630797No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4920.101656253099276No Hit
CAGCAGAACAACGGAGACGTCGTAATCGTTGGCCGCTTTGTCAG4910.10144963469866772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)