FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523859
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14660.27984629451818144No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7530.14374096846670573No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6580.12560631773053435No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5900.11262572562464328No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5290.10098137094141743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)