FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504381
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44910.8903983298339946No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32360.6415784892769554No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19880.394146488468043No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13030.2583364559727666No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11620.2303813981890674No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9970.19766803269750444No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9720.19271146216847979No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9590.19013404549338694No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9550.189340994208743No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9120.18081569289882055No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8760.173678231337025No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8180.16217898770968772No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7630.15127453254583342No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5820.11538896191569468No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5270.10448450675184039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)