FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519118
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21260.4095407980459163No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18910.36427170701073747No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17260.3324870260711437No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15100.29087798920476654No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11000.21189787293062465No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9890.19051545120762522No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9310.17934265427128324No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC8830.17009620163431052No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8660.16682141632538267No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8360.16104238342727473No Hit
AGTGCTGACCACCTTGGTAGAGTGGTTATCTTCAACTTTGGACG7990.15391490951960826No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7620.1467874356119418No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC7550.14543899460238327No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7340.14139367157370772No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6750.13002824020742876No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6280.12097442200039298No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6060.1167364645417805No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5970.1150027546723481No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5750.11076479721373561No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5620.1082605496245555No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5340.10286678558632141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)