FastQCFastQC Report
Wed 31 May 2023
EGAF00007941351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519118
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44450.8562600410696606No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22690.4370875215268975No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20240.38989208619234933No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17560.3382660589692517No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14170.27296298722063195No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11710.22557491745614677No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9770.18820383804838206No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG9480.18261743958021107No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9160.17645313782222924No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA8520.16412453430626564No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8470.16316136215658097No Hit
GAAAAAGCTATCCCTACCCTGGCAGACGCAG8460.16296872772664403No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8210.15815286697822076No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8100.1560338882489145No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7980.15372227508967132No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7700.14832851105143724No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7310.1408157682838969No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6610.1273313581883117No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6380.12290076629976228No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6330.12193759415007764No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6030.11615856125196967No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5710.10999425949398789No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5610.10806791519461856No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5440.10479312988569073No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5220.10055517242707823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)