FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478069
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40320.8433928993513489No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13990.2926355818929903No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10110.21147574931652127No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9840.2058280290083649No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9730.20352710591985673No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9230.19306836460845608No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7820.16357471411030625No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6200.12968839226136814No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5840.12215809851715966No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5730.1198571754286515No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5640.1179746019925994No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5000.10458741311400656No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4930.10312318933041045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)