FastQCFastQC Report
Sun 21 May 2023
EGAF00007941354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502327
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14490.2884575187079333No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9660.19230501247195553No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7280.1449255166455317No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5990.11924503361356248No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5860.11665707795917798No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5040.1003330499853681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)