FastQCFastQC Report
Wed 31 May 2023
EGAF00007941355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502327
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42590.8478540870787356No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13980.278304769602271No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10900.21699012794454609No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9770.19449482110258856No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9740.19389760056696137No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9310.18533743955630497No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6280.12501816545795866No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6260.1246200184342072No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5290.10530988778226136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)