FastQCFastQC Report
Sun 21 May 2023
EGAF00007941357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551221
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17700.32110532799004393No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17000.3084062472220761No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15350.2784726996975805No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10510.19066762695905998No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9810.17796854619109215No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9810.17796854619109215No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9700.17597297635612577No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8520.15456595449012284No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8010.14531376707346055No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7730.14023413476627342No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6990.126809392240136No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6630.12027843641660968No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6600.11973419009798247No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6120.11102624899994738No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5890.10685369389047224No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5800.10522095493459066No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5650.1024997233414547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)