FastQCFastQC Report
Wed 31 May 2023
EGAF00007941361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481276
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34900.7251556279556844No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC24530.5096867493912017No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23190.48184409777341897No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21160.4396645583823004No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9980.20736542025781463No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9790.2034175815955917No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6620.13755101023113558No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6610.13734322924891332No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6060.12591527522668905No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6000.12466858933335549No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5850.1215518746000216No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5450.11324063531113124No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)