FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446547
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22620.5065536214553004No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14180.3175477609299805No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13680.3063507312780066No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8900.19930712780513588No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8720.19527619713042524No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7910.17713700909422747No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7250.16235692995362191No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6450.14444168251046363No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6440.14421774191742415No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6100.13660376175408187No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5760.1289897815907396No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5750.12876584099770014No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5160.1155533460083709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)