FastQCFastQC Report
Sun 21 May 2023
EGAF00007941364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453681
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10910.24047733980484082No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7880.17369032425867514No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6460.14239079882119815No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6170.13599864221776975No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5860.12916564722789803No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5200.11461798047526786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)